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Produktbild: Mathematical Biophysics

Mathematical Biophysics

Aus der Reihe Biological and Medical Physics, Biomedical Engineering

96,29 €

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Erscheinungsdatum

26.11.2013

Verlag

Springer New York

Seitenzahl

273 (Printausgabe)

Dateigröße

10118 KB

Sprache

Englisch

EAN

9781461487029

Beschreibung

Produktdetails

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Erscheinungsdatum

26.11.2013

Verlag

Springer New York

Seitenzahl

273 (Printausgabe)

Dateigröße

10118 KB

Sprache

Englisch

EAN

9781461487029

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  • Produktbild: Mathematical Biophysics
  • PrefacePart I Basic models in mathematical biophysicsChapter 1 Growth and catalysis models
    Unlimited growth. Exponential growth. Self-catalysis (Auto-catalysis) Limited growth. The Verhulst equation
    Constraints with respect to substrate. Models of Monod and Michaelis-Menten
    Competition. Selection
    Jacob and Monod trigger system
    Classic Lotka and Volterra models
    Models of species interactions
    Models of the enzyme catalysis
    Model of a continuous microorganism culture
    Age structured populations
    Leslie matrices
    Continuous models of age structureChapter 2 Oscillations, rhythms and chaos in biological systems
    Oscillations in glycolysis
    Intracellular calcium oscillations
    Deterministic Chaos
    Chaos in the community of three species
    Periodic supply of substrate in the system of glycolysisChapter 3 Spatiotemporal self-organization of biological systems
    Waves of life
    Autowaves and dissipative structures
    Basic model "Brusselator" Localized dissipative structures
    Belousov-Zhabotinsky reactionChapter 4 Model of the impact of a weak electric field on the nonlinear system of trans-membrane ion transport
    Transmembrane ion transport model
    Bistable model
    Auto -oscillating systemPart II Models of complex systemsChapter 5 Oscillations and periodic space structures of pH and electric potential along the cell membrane of algae Chara corallina
    Kinetic model of the proton ATPase (pump) Equation, describing dynamics of proton concentration in the vicinity of the cell
    Equation for potential dynamics
    Oscillations in the local system
    pH patterns along the cellular membrane
    Dependence of the processes on light intensity. Hysteresis
    Scheme of interactions of photosynthesis and ion fluxes leading to the nonlinear dynamicsChapter 6 Models of Morphogenesis
    Turing instability
    Morphogenetic field
    Model of a distributed trigger
    Animal coat markings
    Models of amoeba aggregation. The role of chemotaxisChapter 7 Autowave processes, nerve pulse propagation, and heart activity
    Experiments and model of Hodgkin and Huxley
    Reduced FitzHugh-Nagumo Model
    Excited element of the local system
    Running pulses
    Detailed models of cardiomyocytes
    Axiomatic models of excited medium. Autowave processes and cardiac arrhythmiaChapter 8 Nonlinear models of DNA dynamics
    Hierarchy of structural and dynamical models
    Linear DNA theory
    Simple linear model of an elastic bar
    Nonlinear models of DNA mobility. Mechanical analogue
    Mathematical model, simulating single DNA base's nonlinear oscillations
    Physical analogues of real DNA sequences
    Long-range effects
    Nonlinear mechanisms of transcription regulationPart III Kinetic models of photosynthetic processesChapter 9 Models of photosynthetic electron transport. Electron transfer in a multienzyme complex
    Organization of processes in photosynthetic membrane
    Kinetic description of redox reactions in solution
    Modeling electron transfer in a multienzyme complex
    Electron transfer in a two-component complex
    Electron transfer in a n-carrier complex
    Electron transport via mobile carriers
    Electron transport in an isolated photosynthetic reaction centerChapter 10 Kinetic model of interaction of two photosystems
    Types of regulation of photosynthetic processes
    Model of PSI and PSII interaction
    Subsystem PSII
    Scheme of PSII states
    Charge separation
    Submodel of PSI
    Description of the mobile carrier redox evolution
    Relationships between total concentrations of electron carriers
    Modeling of electron transport chain of wild type and mutant Arabidopsys thalianaChapter 11 Detailed model of electron transfer in PSIIFluorescence as an indicator of the state of the photosystem
    Scheme of PSII states
    Equations describing processes in PSII
    Dependence of rate constants on thylakoid transmembrane electric potential
    Energy loss processes
    Experiment
    Description of events in PSII electron transport system after a short light flashChapter 12 Generalized kinetic model of primary photosynthetic processes
    The structure of the model
    Photosystem II complex
    Cytochrome b6f complex
    Photosystem I complex
    Mobile carriers in the kinetic model
    Role of transmembrane electric potential
    Transmembrane ion transfer and   generation
    Buffer properties of lumen and stroma
    Parameter values
    Simulation of fluorescence transients at different light intensities
    The role of different states of photosystem II in fluorescence induction
    Simulation of   kineticsPart IV Direct multiparticle models of processes in subcellular systemsChapter 13 Method of direct multiparticle simulation of protein interactions
    Restricted diffusion of mobile electron carriers in photosynthetic membrane
    Direct model scene
    Brownian dynamics of mobile carriers
    Simulation of cyclic electron transport around photosystem IChapter  14 Modeling of protein complex formation in solution with diffusion and electrostatic interactions
    Steps of redox protein interactions
    Model of protein-protein interaction in solution
    Protein diffusion. Approximation with ellipsoids of revolution
    Simulation of geometric shape of proteins and their collisions
    Electrostatic interactions
    Simulation of complex formation
    Docking rate constant dependence on ionic strength of solution
    Comparative analysis of the interaction of Pc with Cyt f and PSI reaction centers in higher plants and cyanobacteria. Role of electrostaticsChapter 15 Modeling of protein interactions in photosynthetic membrane
    Interaction of Pc with Cyt f in thylakoid lumen
    Modeling of Pc -PSI interaction considering membrane surface charge and multienzyme complexes embedded in the membrane
    Modeling of Pc interaction with cyt f and PSI considering membrane surface charge and multienzyme complexes embedded in the membraneChapter 16 Spaciotemporal evolution of electrochemical potential ¿µH+ in photosynthetic membrane
    Modeling of proton transfer
    Model of proton release into lumen
    Model of lateral diffusion of protons
    Proton flow through the ATP-synthase and ATP synthesis
    Computer simulation of proton gradient evolution and ATP creationConclusion
    References
    Index